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DNA Baser Sequence Assembler |
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DNA Baser Assembler is unique and revolutionary bioinformatics software for
- manual DNA sequence assembly
- automatic DNA sequence assembly
- DNA sequence analysis
- automatic sample processing
- sample viewer/editor
- contig editing
- file format conversion
- mutation detection.
Size: 3 MB
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Chromatogram Explorer Lite |
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Windows Explorer clone for DNA sequence analysis. Features:
- Display sample's content as you browse through your folders
- Highlight low quality regions
- Manually or automatically trim low quality ends (batch)
- Convert between miscellaneous formats
- View FASTA, SEQ, TXT, SCF, ABI, AB, AB!, AB1 samples
- View sample properties & statistics
- Display quality values
- Extract bases from chromatograms (copy to clipboard)
Size: 1 MB
Freeware - Download page |
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FASTA to multi-FASTA converter |
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Fasta to multi-Fasta Converter will search for all FASTA files in the specified folder and will merge their content in a single file, generating a standard or custom multi-FASTA file.
Protein FASTA files are not supported.
Hardware requirements:
CPU: Intel Pentium I, RAM: 0.1 GB, Hard Drive: 0.002 GB free space
Freeware - Download page |
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multi-FASTA to FASTA converter |
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Use Fasta to multi-Fasta Converter to split a multi-FASTA file in multiple standard FASTA files. Protein FASTA files are not supported.
The resulted FASTA files will be automatically saved in the same folder where the input files are located OR if you checked the 'Create sub-folder' checkbox, a new sub-folder will be created
in the current folder.
Freeware - Download page |
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ABI to FASTA converter |
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Using 'ABI to FASTA Converter' you can batch convert multiple ABI chromatogram files to FASTA files, with a single click.
ABI to FASTA Converter offers a great relief for molecular biologists that must convert hundreds or thousands of ABI/AB chromatogram files manually. With this automatic ABI to FASTA
Converter you can convert hundreds of ABI chromatogram files in seconds.
v 1.1
Freeware - Download page |
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Sequence dereplicator |
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Therefore, before further DNA sequence analysis, it is necessary to find duplicate
DNA sequences and remove them. Our DNA sequence dereplication tool sorts all unique DNA sequences (FASTA) belonging to your clone libraries, by moving/coping them into the specified
folder.
Clone Library Dereplicator simplifies the dereplication of all type sequence libraries (16S rRNA, 18S rRNA, 23S rRNA, 28S rRNA, functional and structural proteins) and prepares the
raw sequences for subsequent analyses or contig assembly.
Freeware - Download page |
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GBK to FASTA converter |
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GenBank to FASTA converter is a a freeware molecular biology tool that can convert GenBank (gb/gbk) file format to FASTA format. The converter is really small
and portable. All operating systems from Windows 95 to Windows Vista.
How to use it: Locate the GBK files you want to convert and press the CONVERT button. A folder called 'Converted files' will be automatically created to store the new generated FASTA files.
Freeware - Download page |
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Cell counter |
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Cell Counter is a freeware tool that will help you to count the cells shown on computer's screen by displaying a grid over your image. It can draw a transparent or semi-transparent
grid on top of any application/image.
How to use it:
Open the image that contains the cells to be counted in your preferred software/image viewer. Start Grid Cell Counter, and choose the size of the grid.
Freeware - Download page |
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DNA Nucleotide Counter |
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DNA Nucleotide Counter is a freeware tool that shows the proportions between nucleotides (CG versus AT) in a DNA sequence.
Compact and easy to use.
Freeware - Download page |
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RNA Baser Sequence Assembler |
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RNA Baser represents an extension of DNA Baser, specialized in processing rRNA sequences. It is optimized for early integration of
sequence and metadata. This way, the metadata will stay attached to the primary sequence information throughout
the complete workflow of sequence analysis, until final submission.
- In addition, it is optimized for data exchange with standard non-commercial software used for rRNA sequence analysis and submission.
- It is a joint project of HeracleSoftware, Ribocon GmbH and Max
Planck Institute for Marine Microbiology in Bremen, Germany
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DNA Baser Assembler is so small that you can easily copy it on a USB flash stick or floppy disk and take it with you.
Our bioinformatics tools can be 
