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DNA Chromatogram Explorer Lite
View, edit, and convert chromatograms. Trim low quality ends automatically.

 

View, edit, and convert chromatograms. Trim low quality ends automatically

 

 

 


Program description

 

DNA Chromatogram Explorer is a Windows Explorer clone dedicated to DNA sequence analysis and manipulation. You can view the chromatograms while browsing through folders using its integrated file explorer. With a single click you can trim the low quality bases at the end of your samples. The Lite version of Chromatogram Explorer is freeware.

 

With DNA Chromatogram Explorer you can:

  • Display sample's content as you browse through your folders
  • Highlight low quality regions
  • Manually trim low quality end
  • Automatically trim low quality ends (batch)
  • Convert between miscellaneous formats
  • View FASTA, SEQ, TXT samples
  • View SCF, ABI, AB, AB!, AB1 samples
  • View sample's properties & statistics
  • View quality values
  • Extract bases from chromatograms (copy to clipboard)
  • Disk operations (delete samples, move, etc)

 

free sequence analysis software

 

How to use it

 

 

Exploring your samples

Start DNA Chromatogram Explorer, and locate the folder that contains your samples files. All samples (ABI/SCF chromatograms or simple FASTA sequences) will be shown in the right panel. Low quality ends are shown in dark gray color.

 

Converting your samples

Press 'Convert' or 'Convert all' and your file will be saved as SCF or FASTA (you can choose the output format),

 

Automatic end trimming

If the 'Remove low quality ends' checkbox is active, the low quality bases at the end of the sample will be automatically trimmed.

 



Animated presentation

 

DNA Chromatogram Explorer - sequence analysis tool

 

 

 

How to install it


DNA Chromatogram Explorer is delivered in a small package together with other free molecular biology tools. Download the package and double click it. The programs inside the package will be extracted to the destination folder (specified by you). Go to the destination folder and double click the program you want to use.

This software tool installs in any computer even if you don't have administrator rights.

 

 

Uninstall

 

As DNA Chromatogram Explorer installs zero files in your computer, you don't need to uninstall it. To uninstall the DNA Chromatogram Explorer, just delete it.

 

Name Chromatogram Explorer Lite
Version 3.1  new
Date 28 April 2010
Package size ~ 5 MB
Download time less than 12 seconds (for DSL)
View, edit, and convert chromatograms. Trim low quality ends automatically
free download

 

 

Portability


This software tool is really small so you can easily copy it on a floppy disk or USB flash stick and take it with you or send it to your colleagues via email.

 

 

System requirements

 

DNA Chromatogram Explorer can run on any version of Windows from Windows 98 to Windows 7 and also on Mac via Parallels or Bootcamp. It does not install additional libraries, updates, DLL, Java or registry keys into your system.

 

 

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molecular biology software
DNA chromatogram assembly