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DNA Chromatogram Explorer Lite
Exploring and trimming your chromatograms is not a problem anymore
contig assembly software

 


Program description

With DNA Chromatogram Explorer, you can automatically view, trim and convert all chromatogram files (SCF, ABI, AB1, AB) in the current folder while you are navigating through your computer.

 

 

Details
Chromatogram Explorer is a very easy to use tool that will list all chromatogram files (SCF, ABI, AB1, AB) in the current folder. You can view the chromatograms while browsing through folders using its integrated Windows Explorer. Chromatogram Explorer can also trim low quality bases at the ends of your samples and convert the sequences from one format to another with a single push of a button!

Now you can process/sort/search chromatograms in seconds.

 

contig assembly software

 

How to use it
Start Chromatogram Explorer, and locate the folder that contains your chromatogram files. All chromatogram files (ABI/SCF) will be shown in the right panel. Low quality ends are shown in dark gray color.

Press 'Save' and your file will be saved as SCF of FASTA (you can choose the output format), while the low quality bases at the ends will be automatically trimmed. Chromatogram Explorer is so small that you can put it on a floppy disk of Flash stick and taken it with you.



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DNA contig assembly


Download

Name Chromatogram Explorer Lite
Version 2.3.5                                  new
Date 30 Sept 2008
Package size about 4 MB
Download time less than 15 seconds (for DSL)
sequence assembling
free download



Install process
The program is delivered in a very small package together with other free molecular biology tools. Just download the package and double click it. It will automatically self-extract.

 

 

Uninstall process
Because Chromatogram Explorer installs zero files in your computer, you don't need to uninstall it. To uninstall the Chromatogram Explorer, just delete it.

 

 

Portability
This program is very small so you can easily copy it on a USB flash stick or floppy disk and take it with you or send it to your colleagues via email.

 

 

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Other similar programs included in the package:

 

Name
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Description
DNA Baser Sequence Assembler
DNA Baser Sequence Assembler
DNA Baser is a tool for DNA sequence assembly, DNA sequence analysis, contig editing, and mutation detection. It also offers a powerful chromatogram viewer/editor.
RNA Baser Sequence Assembler
DNA Baser Sequence Assembler
DNA Baser is a tool for DNA sequence assembly, DNA sequence analysis, contig editing, mutation detection and automatic metadata integration.
FASTA to multi-FASTA converter
FASTA to multi-FASTA
FASTA to multi-FASTA is a freeware converter will merge the content of all FASTA files in the specified folder, in a single multi-FASTA file.
multi-FASTA to FASTA converter
multi-FASTA to FASTA
multi-FASTA to FASTA is a freeware converter program will split a multi-FASTA file in multiple standard FASTA files.
ABI to FASTA converter
ABI to FASTA Converter
ABI to FASTA Converter is a free tool will convert all (selected) ABI files to FASTA files. All you need to do is to locate your ABI chromatogram files and press the CONVERT button.
Grid cell counter
Grid cell counter
Gird cell counter will help you to count faster the cells shown on computer's screen by displaying a grid over your image. Freeware.
GBK to FASTA converter
GBK to FASTA converter freeware
GenBank to FASTA is a freeware program will convert GenBank (gbk) file format to FASTA format.
DNA Counter
DNA Counter
DNA Counter will show the proportions between nucleotides in a DNA sequence (GC to AT ratio).
Show Desktop
Shows the amount of free memory in your computer
An enhanced replacement for the Show Desktop icon/command. It can also show the amount of free memory in your computer.

 

 

 

 

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molecular biology software
DNA chromatogram assembly