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DNA Chromatogram Explorer Lite
View, edit, and convert chromatograms. Trim low quality ends automatically.

View, edit, and convert chromatograms. Trim low quality ends automatically

 

 

 


Program description

 

DNA Chromatogram Explorer Lite is a Windows Explorer clone dedicated to DNA sequence analysis and manipulation. You can view the chromatograms while browsing through folders using its integrated file explorer. With a single click you can trim the low quality bases at the end of your samples.

The Lite version of Chromatogram Explorer is freeware.

 

 

 

How to use it

 

Exploring your samples

Start DNA Chromatogram Explorer and navigate to your DNA sample files (chromatograms).

All chromatograms in that folder will be displayed in the right panel (see picture below). SCF and ABI (ABI, AB, AB1, AB!) chromatogram files are supported. Low quality ends are shown in dark gray color. To view non-chromatogram files (FASTA, SEQ, TXT) just double click them.

 

Converting your samples

Press 'Convert' or 'Convert all' and your file will be saved as SCF or FASTA (as you choose).

 

Automatic end trimming

With DNA Chromatogram Explorer you can automatically trim low quality ends of all chromatograms in a folder. Please see this short tutorial.

 

 



Animated presentation

DNA Chromatogram Explorer - sequence analysis tool


 

 

How to install it


DNA Chromatogram Explorer is delivered in a small package together with other free molecular biology tools.

You don't need administrator rights in order to 'install' this package.

  1. Download the package
  2. Double click it to unpack it
  3. Specify the destination folder (where to unpack it)
  4. Go to the destination folder and double click the program you want to use

 

Name Chromatogram Explorer Lite
Version 3.2
Package size ~ 5 MB
Download time less than 12 seconds (for DSL)
View, edit, and convert chromatograms. Trim low quality ends automatically
free download

 

 

 

Uninstall

 

DNA Chromatogram Explorer installs zero files in your system. Therefore, you don't need to uninstall it. To uninstall the DNA Chromatogram Explorer, just delete it.

 

 

Portability


This software tool is really small so you can easily copy it on a floppy disk or USB flash stick and take it with you or send it to your colleagues via email.

 

 

System requirements

 

DNA Chromatogram Explorer can run on any version of Windows from Windows 98 to Windows 7 and also on Mac via Parallels or Bootcamp. It does not install additional libraries, updates, DLL, Java or registry keys into your system.

 

 

Lite versus Pro

Feature

Lite

Pro

Display sample's content as you browse through your folders

yes

yes

Highlight low quality regions

yes

yes

Manually trim low quality end

yes

yes

Automatically trim low quality ends (batch)

yes

yes

Convert between miscellaneous formats

yes

yes

View FASTA, SEQ, TXT samples

yes

yes

View SCF, ABI, AB, AB!, AB1 samples

yes

yes

View sample's properties & statistics

yes

yes

View confidence scores

yes

yes

Extract bases from chromatograms (copy to clipboard)

yes

yes

Perform file operations (copy/delete/move samples)

yes

yes

Show all chromatogram files in a folder

Limited

yes

Convert all samples in a folder

Limited

yes

Double click a file to open it

Not available in Lite version

yes

 

 

 

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Similar bioinformatics tools included in this package

 

Name   Description
DNA Baser Sequence Assembler
DNA Baser Sequence Assembler
DNA Baser is a tool for DNA sequence assembly, DNA sequence analysis, contig editing, and mutation detection. It also offers a powerful chromatogram viewer/editor.
GBK to FASTA converter
GBK to FASTA converter freeware
GenBank to FASTA is a freeware program will convert GenBank (gbk) file format to FASTA format.
ABI to FASTA converter
ABI to FASTA Converter
ABI to FASTA Converter is a free tool will convert all (selected) ABI files to FASTA files. All you need to do is to locate your ABI chromatogram files and press the CONVERT button.
Grid cell counter
Grid cell counter Gird cell counter will help you to count faster the cells shown on computer's screen by displaying a grid over your image. Freeware.
Convertrix
A Batch DNA Sample Converter Convertrix is a molecular biology command line tool for converting between several popular DNA sample formats. It can automatically trim the untrusted regions (low quality bases) at the end of samples.
DNA Counter
DNA Counter DNA Counter shows the proportions between nucleotides in a DNA sequence (GC to AT ratio).
Chromatogram Explorer
multi-FASTA to FASTA

DNA Chromatogram Explorer is a Windows Explorer clone dedicated to DNA sequence analysis and manipulation. You can view the chromatograms while browsing through folders using its integrated file explorer. With a single click you can trim the low quality bases at the end of your samples.

Everything to FASTA converter
multi-FASTA to FASTA

Everything to Fasta Converter converts the specified samples (SCF, ABI, FASTA, multiFasta, GBK, multiGBK, SEQ, TXT) to FASTA format. Starting with version 3.0 protein FASTA files are also supported.

 

 

molecular biology software
DNA chromatogram assembly
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