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sequence assembly software
abi trace assembly

Everything to FASTA converter
Converts your sample files in seconds!
Multi-FASTA to FASTA converter logo




Everything to Fasta Converter converts the specified samples (SCF, ABI, FASTA, multiFasta, GBK, multiGBK, SEQ, TXT) to FASTA format. Starting with version 3.0 protein FASTA files are also supported.



SCF, ABI, GBK, multiFASTA to FASTA converter




Starting with 2011, Everything to Fasta Converter has been integrated in DNA Baser together with other free molecular biology tools and it is available under the Tools menu:

Converting any files to fasta format


To get this convertor, just download the DNA Baser package. The download time should be below 10 seconds.


Download Multi-FASTA to FASTA converter




The converter is very small so you can easily copy it on a USB flash stick and take it with you or send it to your colleagues via email. Freeware.

Free Multi-FASTA to FASTA converter. Contig assembly software.


How to use the converter

  • In DNA Baser, start the Everything to Fasta Converter from the 'Tools -> Everything to Fasta converter' menu.
  • Locate the folder that contains your samples
  • Choose how you want to name the resulted files.
  • Press the 'Start' button.

Start Multi-FASTA to FASTA converter from Tools menu


The resulted FASTA files is automatically saved in the same folder where the input files are located OR if you checked the 'Create sub-folder' checkbox, a new sub-folder will be created in the current folder. The resulted FASTA files will be saved in this folder.



Similar programs


Name   Description
multi-FASTA Builder
FASTA to multi-FASTA

FASTA to multi-FASTA is a freeware converter will merge the content of all FASTA files in the specified folder, in a single multi-FASTA file.

Batch sequence processing
Handy tool that automates the sequence processing job. It can apply the following operations to the specified samples: trim untrusted ends, remove vectors, integrate metadata, convert chromatograms (SCF/ABI) to FASTA.
GBK to FASTA converter
GBK to FASTA converter freeware
GenBank to FASTA is a freeware program will convert GenBank (gbk) file format to FASTA format.
ABI to FASTA converter
ABI to FASTA Converter
ABI to FASTA Converter is a free tool will convert all (selected) ABI files to FASTA files. All you need to do is to locate your ABI chromatogram files and press the CONVERT button.



More free molecular biology programs


Name   Description
DNA Sequence Assembler
DNA Sequence Assembler
DNA Baser is a tool for DNA sequence assembly, DNA sequence analysis, contig editing, and mutation detection. It also offers a powerful chromatogram viewer/editor.
Chromatogram Explorer
Chromatogram Explorer
Chromatogram Explorer is a tool will display the content of all chromatogram files (SCF, ABI, AB1, AB) in the current folder. Working with chromatogram files will be a pleasure form now on!
Grid cell counter
Gird cell counter will help you to count faster the cells shown on computer's screen by displaying a grid over your image. Freeware.
DNA Counter
DNA Counter
DNA Counter will show the proportions between nucleotides in a DNA sequence (GC to AT ratio).


molecular biology software
DNA chromatogram assembly