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scf trace assembly

ABI to FASTA converter

Converts hundreds of ABI chromatogram in seconds







Using 'ABI to FASTA Converter' you can batch convert multiple ABI chromatogram files to FASTA files, with a single click.


ABI to FASTA Converter offers a great relief for molecular biologists that must convert hundreds or thousands of ABI/AB chromatogram files manually. With this automatic ABI to FASTA Converter you can convert hundreds of ABI chromatogram files in seconds. All with A SINGLE PUSH OF A BUTTON! Now the ABI to FASTA converter can also automatically trim low quality ends from your chromatograms:


automatically trim low quality ends in your chromatograms



How to use it

Start ABI to FASTA Converter program by double-clicking the Abi2Fasta.exe file. Locate your ABI files and press the CONVERT button. A folder called Converted files' will be automatically created to store the new generated FASTA files.



Supported files


ABI to FASTA Converter supports all standard Applied Biosystems ABI chromatogram files: ABI, AB, AB1, AB!

Batch convert multiple ABI files to FASTA files





Name ABI to FASTA converter
Version v1.1.2
Package size about 1.3 MB
Download time less than 3 seconds (for DSL)

Free download


AB to FASTA Converter is delivered as a stand alone Windows application. Just download the package and double click it to run it.





The free version allows you to convert a limited number of files. The registered version does not have this limitation. Purchase it now.



How to install it

ABI to FASTA converter is delivered in a small package together with other free molecular biology tools. Download the package and double click it. The programs inside the package will be extracted to the destination folder (specified by you). Go to the destination folder and double click the program you want to use.

This software tool installs in any computer even if you don't have administrator rights.




ABI to FASTA converter tool is really small so you can easily copy it on a floppy disk or USB flash stick and take it with you or send it to your colleagues via email.



System requirements


ABI to FASTA converter can run on any version of Windows from Windows 98 to Windows 7 and also on Mac via Parallels or Bootcamp. It does not install additional libraries, updates, DLL, Java or registry keys into your system.




Other similar programs included in the package


Name   Description
DNA Sequence Assembler
DNA Sequence Assembler
DNA Baser is a tool for DNA sequence assembly, DNA sequence analysis, contig editing, and mutation detection. It also offers a powerful chromatogram viewer/editor.
GBK to FASTA converter
GBK to FASTA converter freeware
GenBank to FASTA is a freeware program will convert GenBank (gbk) file format to FASTA format.
ABI to FASTA converter
ABI to FASTA Converter
ABI to FASTA Converter is a free tool will convert all (selected) ABI files to FASTA files. All you need to do is to locate your ABI chromatogram files and press the CONVERT button.
Grid cell counter
Grid cell counter Gird cell counter will help you to count faster the cells shown on computer's screen by displaying a grid over your image. Freeware.
A Batch DNA Sample Converter Convertrix is a molecular biology command line tool for converting between several popular DNA sample formats. It can automatically trim the untrusted regions (low quality bases) at the end of samples.
DNA Counter
DNA Counter DNA Counter shows the proportions between nucleotides in a DNA sequence (GC to AT ratio).
MultiFasta Builder
FASTA to multi-FASTA
The MultiFasta Builder is a file converter the merges the specified sample files (ABI, SCF, FASTA, multiFASTA, GBK, multiGBK, SEQ, TXT) in a single multiFasta file.
Chromatogram Explorer
multi-FASTA to FASTA

DNA Chromatogram Explorer is a Windows Explorer clone dedicated to DNA sequence analysis and manipulation. You can view the chromatograms while browsing through folders using its integrated file explorer. With a single click you can trim the low quality bases at the end of your samples.

Everything to FASTA converter
multi-FASTA to FASTA

Everything to Fasta Converter converts the specified samples (SCF, ABI, FASTA, multiFasta, GBK, multiGBK, SEQ, TXT) to FASTA format. Starting with version 3.0 protein FASTA files are also supported.



Keywords: automatically convert all ABI chromatogram files, convert ABI to FASTA file format, AB chromatograms, Applied Biosystems ABI chromatograms converter, batch file converter

DNA chromatogram assembly
contig assembly software
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