The Project Builder
The Project Builder is the place where you define your current project. The project is the set of files on which tasks (such as sequence assembly, batch sequence processing) are applied. The Project Builder it is only used to build a new project. This page explains how to load an existing project or to save the current project.
The Project Builder has the following components:
The following assembly tasks can be performed:
You can use the Sample Explorer to quickly open and inspect your samples. The FOLDER LIST (the left side of the Sample Explorer) enables navigation through folders, while the FILE LIST (the right side of the Sample Explorer) shows the content of the folders. The FILE LIST will display all file types or only certain types of files. The choice is made from the FILE TYPE box.
The JOB LIST contains the files on which the desired type of function (either sequence assembly, batch sequence assembly, sequence processing) will be applied. To add files from the FILE LIST to the JOB LIST you can use the add buttons or drag and drop files from Sample Explorer or from Windows Explorer. Different file types (SCF, ABI, FASTA, SEQ, etc) can be mixed (assembled) together.
If checked, the assembly process will be done to a reference sequence. To define a reference, drag and drop it from Sample Explorer into the 'Reference' box. For more details about assembling to reference, click here. Only the size and the direction of the reference sequence will be taken into account when calculating the contig, not its bases.
If checked, the corresponding metadata will be added to all sequences that result from all the sequence assembly functions or from the sequence processing function. For more information regarding metadata, click here.
Quick access to the sequence assembly options.
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