Batch sequence assembly with DNA Baser Sequence Assembler|Assemble thousands of samples in minutes without touching a your computer!

BATCH SEQUENCE ASSEMBLY

Assemble thousands of samples in minutes without touching your keyboard!

Creating revolution in biology

DNA Baser is the FIRST TOOL ON THE MARKET (and from what we know, it is also the ONLY tool on the market) that offer batch sequence assembly. This unique feature is extremely useful when assembling a large number of sequences (hundredths/thousands) that belong to different contigs. The average assembly speed (considering that each contig has two SCF sample files) is about one contig per second which results in 3600 contigs per hour!

Instead of wasting days or weeks assembling your samples into contigs you can be ready in hours!!!

How it works?

All you have to do is to navigate to the folder where your samples are located, define a pattern so the program can recognize which samples belong to the same contig and press the START button. You are now relieved from the slavery of performing boring and repetitive tasks. You can go and enjoy a cafe. The software will do your job. It will start to pair your samples and for each pair it will:

imports the samples
imports the reference (if any defined)
automatically clean untrusted regions
assembles the samples
automatically remove the primers/vectors
automatically integrate metadata (if any defined)
automatically correct the ambiguities
automatically saves the contig/project/log to disk

Then, the program will move to the next pair and the cycle repeats.

Which type of batch is right for you?

DNA Baser can detect the pair of samples in two ways: based on the name of the sequences and based on the localization of sequence files in subfolders. Therefore, you use DNA Baser to perform batch sequence assembly:

By sub-folders if you have the samples belonging to the same contig in the same folder.
By filename pattern if your samples are ALL in the same folder but their name follow a pattern.