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scf trace assembly
DNA contig assembly

DNA Baser v3
Presenting the new/improved edition of DNA Baser


An affordable alternative to the really expensive software for DNA sequence assembly and contig editing.

sequence assembling software

 

free Bringing the big news!

 

We have the great pleasure of presenting a brand new version of DNA Baser. We listened to our customers request and implemented some of the most requested features.

One of the new features is "Save/load project". This allows you to save the entire project to disk and load it later. All edits the user made will be restored exactly as left when the user closed the program. Another important feature is "Add/Remove samples to/from project".

 

 

free More good news: It is free!

 

The key included in the program allows you to use this new version for free. All features are be fully unlocked!

 

 

free Even more good news: Free upgrade!

 

All customers purchasing DNA Baser v2 will be able upgrade to v3 without any additional fees. When version 3 will be finally released, please send this coupon to us together with your upgrade request: "Q2010UP30".

Important notes:

  • Don't lose the coupon above. Without it you will not get your free upgrade!
  • Purchasing DNA Baser v2 does not guaranty that you will receive a definitive key for DNA Baser v3 (unless you are a beta tester) as long as it is in pre-release stage.

 

free  Building software together

 

DNA Baser more user friendly and more affordable than any other similar product on the market. It could not be this way without help from our customers and beta testers. By submitting feature requests, feedback and bug reports you help us to make a better product and to keep its price as low as possible. At the end you will directly benefit from it. Please don't hesitate email us or to chat (live) with us! Your opinion matters!

 

What's new in this version

Find detailed list of new features here.

 

 

Stay tuned

Do you want to receive news as new updates are released? Just send us an email with the subject "subscribe".

 

 

Download

Instant download link here

 

 

free Beta software

This product is beta. This means that some features may be glitch.

Current status: stable beta

 

 

 

 

 

 

 

 

 

 

 

 

100% virus free All programs have been scanned against viruses


 

What's new in version 3.0?

 

New features (major):

  • Save the entire project to disk (samples, contig, user editing and corrections, etc). It can be done manually and/or automatically.
  • Remember the edits that the user made in contig/input samples when the contig is recalculated.
  • Delete samples from project.
  • Add samples to project.
  • MRU (Most Recent Used Files and Folders) - Quickly re-open a sample file/project that was used recently.

New features:

  • "Rainbow" colors for assembly grid background - Helps you to quickly stop ambiguities, mismatches, errors
  • Clicking on sample's name (first column in Assembly grid) makes the cursor to jump at the beginning of that sample
  • Two new menus were added in Contig Assembly window ('Sample' menu and 'Project' menu)
  • Automatically associate DNA Baser with project files.
  • Automatically start DNA Baser when a project file is double clicked in Windows Explorer

Improvements:

  • 'Sequence recognition' window was improved
  • Move the "Automatically switch to log" checkbox under the log.
  • Some menu re-arrangement
  • Speed improvement
  • Many other graphic user interface improvements (such as colors in grid and contig map, layout rearrangement, etc)

Fixed:

  • The SCF samples with 1 byte precision info (low precision) are now displayed incorrectly.
  • Some settings related to colors used are now stored/remembered after restarting the application.

 

What is new in v3.0.11?

  • Batch by name pattern based on separator (thanks to Stephan)
  • Tutorial window (with animated logo and sound on new announcement)
  • When the program starts for the first time it starts in tutorial mode
  • Several new menus were added in ‘View’ main menu/
  • Added icons for all tabs in Project Manager (16x16 and also 32x32 pixels)
  • Added top logo in Project manage
  • The level of trust for current contig is now reported in Log
  • Added "Save contig as RC" menu  
  • Add “Save contig” button in Assembly window
  • Add “Mark as trusted/untrusted” button in Assembly window
  • The caption of Assembly window shows the selection size (how many bases were selected by user)
  • Totally rewritten selection tool. The selection follows the cursor as it jumps between rows.

 

What is new in v3.0.12

 

This is a quick release to fix the "Failed to find CallBuyNowURL in DLL!" error introduced in v3.0.11.

 


What was improved in v3.0.11?

  • GUI: Contig bases that will not be saved to disk (because vector removal) are stroked out
  • GUI: The layout of the Assembly window was improved. One of the improvements is the search box which is now bigger and detached
  • GUI: Less flicker during program start up
  • GUI: More descriptive text for main buttons
  • GUI: The tool tips pop-up faster now
  • GUI: Better log for Batch Sample Processing
  • GUI: Ambiguities are shown in a different shade of red (different than low QV bases)
  • Many bugs fixed

 

 

Download

 

If you already have v2.91, you can download the package that contains only v3. Else, you can download the package that contains both versions.

 

DNA Baser v3.0.12

BETA

Package Download link

Size

v2.91 (stable) and v3
DNA Baser Sequence Assembler-Microsoft Windows download

3.3 MB

v3 only
DNA Baser Sequence Assembler-Microsoft Windows download

6.3 MB

 

 

 

System requirements

 

DNA Baser Sequence Assembler can run on any version of Windows from Windows 98 to Windows 7 and also on Mac via Parallels or Bootcamp. It does not install additional libraries, updates, DLL, Java or registry keys into your system. The user does not require administrator privileges in order to install the software.

 

Windows Vista compatible


 

 

Full list of molecular biology tools

 

sequence assembly
Chromatogram Explorer
DNA Counter
DNA Counter
DNA Baser Assembler
Chromatogram Explorer
Sequence dereplicator
Grid cell counter
DNA Counter

 

FASTA to multi-FASTA
multi-FASTA to FASTA
ABI to FASTA Converter
GBK to FASTA converter freeware
DNA Counter
FASTA to multi-FASTA converter
multi-FASTA to FASTA converter
ABI to FASTA converter
GBK to FASTA converter
Convertrix - DNA file format converter

 

DNA Baser (as all other tools listed here) is a portable application. This means that you can run it without any installation.

 

contig assembly software