• Reference file
• Input folder
• Input file type (scf, abi, ab1, ab, fasta, seq, etc)
• Output folder - to write the contig and the log file to
• Recognition sequence DB - used to recognize and clean primers/vectors
• KeepVector - to specify if you want to cut irrelevant parts from your contig before or after the recognition sequence (primer/vector)
• Trimming parameters
• WriteLog - to enable/disable writing the log file to disk

Example of script (create a BAT or CMD file and paste this code in it):

This simple script will call DNA Baser Console using 'c:\samples' as input folder. All SCF samples in that folder will be assembled. The DNA Baser Console exactly as DNA Baser Sequence Assembler: it will automatically import samples, automatically trim low quality ends, remove recognitions sequences, correct the ambiguities and save the log and the contig to disk (in the c:\samples\out' folder in this example). Details

 

Download

Name	DNA Baser Console
Date	2011
Package size	~ 2 MB
Download time	less than 10 seconds

 

 

Price

 

The price is the same as the price of a standard DNA Baser license (Academic or Business). However, if you already purchased a DNA Baser license, you can get DNA Baser Console for only $99. Place your order NOW.

 

 

What's new in this version...

News: The speed and memory requirements have been dramatically improved

What's in the package/How to install it...

DNA Baser Console is delivered in a small package together with other free molecular biology tools. Download the package and double click it. The programs inside the package will be extracted to the destination folder (specified by you). Go to the destination folder and double click the program you want to use.

DNA Baser Console installs in any computer even if you don't have administrator rights. To uninstall DNA Baser Console, just delete it.

Portability...

This software tool is really small so you can easily copy it on a floppy disk or USB flash stick and take it with you or send it to your colleagues via email.

Instant feedback...

This tool is . Please help us make it better. Let us know if you have any feature requests and we will try to integrate them.

 

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Similar bioinformatics tools included in this package

 

Name		Description
DNA Baser Sequence Assembler		DNA Baser is a tool for DNA sequence assembly, DNA sequence analysis, contig editing, and mutation detection. It also offers a powerful chromatogram viewer/editor.
GBK to FASTA converter		GenBank to FASTA is a freeware program will convert GenBank (gbk) file format to FASTA format.
ABI to FASTA converter		ABI to FASTA Converter is a tool will convert all (selected) ABI files to FASTA files. All you need to do is to locate your ABI chromatogram files and press the CONVERT button.
Grid cell counter		Gird cell counter will help you to count faster the cells shown on computer's screen by displaying a grid over your image. Freeware.
Convertrix		Convertrix is a molecular biology command line tool for converting between several popular DNA sample formats. It can automatically trim the untrusted regions (low quality bases) at the end of samples.
DNA Counter		DNA Counter shows the proportions between nucleotides in a DNA sequence (GC to AT ratio).
MultiFasta Builder		The MultiFasta Builder is a file converter the merges the specified sample files (ABI, SCF, FASTA, multiFASTA, GBK, multiGBK, SEQ, TXT) in a single multiFasta file.
Chromatogram Explorer		DNA Chromatogram Explorer is a Windows Explorer clone dedicated to DNA sequence analysis and manipulation. You can view the chromatograms while browsing through folders using its integrated file explorer. With a single click you can trim the low quality bases at the end of your samples.
Everything to FASTA converter		Everything to Fasta Converter converts the specified samples (SCF, ABI, FASTA, multiFasta, GBK, multiGBK, SEQ, TXT) to FASTA format. Starting with version 3.0 protein FASTA files are also supported.